ATP-Binding Cassette Transporter A1
ABCA1geneABCA1 mediates reverse cholesterol transport and HDL particle biogenesis, reducing atherosclerotic lipid burden.
Pathway placement
Cascade stepLipid retention & oxidation
Confidencemedium
RationaleRegulates HDL formation and cholesterol efflux capacity, upstream lipid metabolism.
Also acts inVascular inflammation
Druggability
DruggableYes
Known drugs / candidates1
Small-molecule tractableYes
Antibody tractableYes
EnsemblENSG00000165029
Type I vs Type II discrimination
ScoresLow-confidence (proxy)
R — rupture / Type-I54
C — confounder / Type-II64
A — assay feasibility52
E — evidence strength26
T1DI (composite)6
Specificity differential (R−C)-9.7
Confounder panel (Type-II drivers)
No confounder evidence retrieved.
Tier: light (literature co-occurrence proxy — lower confidence). See the discrimination table for all markers.
Assay & specimen
Class-level default (no specific cleared assay)— generic method inferred from analyte class; confirm against a specific product insert before use.
Specimen
Whole blood — gene is not a circulating analyte; measure protein product or genotype
Collection tube
K2-EDTA whole blood (lavender-top)
Method / principle
SNP genotyping / sequencing; or immunoassay of encoded protein
Reagent / substrate
Allele-specific primers/probes (TaqMan) or NGS panel; or antibody for protein
Platform
qPCR / NGS / array
Turnaround · availability
Send-out · Genotyping widely available; protein assay variable
Literature evidence(4)
- Environmental Factors Modifying HDL Functionality.Current medicinal chemistry · 2022 · PMID 34269662 · doi
- Desmocollin 1 is abundantly expressed in atherosclerosis and impairs high-density lipoprotein biogenesis.European heart journal · 2018 · PMID 29106519 · doi
- Cholesterol Efflux Pathways Suppress Inflammasome Activation, NETosis, and Atherogenesis.Circulation · 2018 · PMID 29588315 · doi
- Saikosaponin-a Attenuates Oxidized LDL Uptake and Prompts Cholesterol Efflux in THP-1 Cells.Journal of cardiovascular pharmacology · 2016 · PMID 26859197 · doi
Omics datasets(6)
- GSE192936GEOABCA1-eRNA as a novel Epigenetic Regulator, promotes cholesterol efflux, Attenuates Macrophage Inflammation and Severity of Coronary Artery Disease [ATAC-seq]
- GSE192937GEOABCA1-eRNA as a novel Epigenetic Regulator, promotes cholesterol efflux, Attenuates Macrophage Inflammation and Severity of Coronary Artery Disease [CUT&TAG]
- GSE192938GEOABCA1-eRNA as a novel Epigenetic Regulator, promotes cholesterol efflux, Attenuates Macrophage Inflammation and Severity of Coronary Artery Disease [MED23 RNA-s
- GSE192939GEOABCA1-eRNA as a novel Epigenetic Regulator, promotes cholesterol efflux, Attenuates Macrophage Inflammation and Severity of Coronary Artery Disease [ABCA1 RNA-s
- GSE192940GEOABCA1-eRNA as a novel Epigenetic Regulator, promotes cholesterol efflux, Attenuates Macrophage Inflammation and Severity of Coronary Artery Disease
- GSE317586GEO3-Hydroxystearic acid promotes cholesterol efflux and attenuates atherosclerosis via the ALKBH5/PAX-8/ABCA1 pathway